EGAF00004966733 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00004966733
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	38651155
Sequences flagged as poor quality	0
Sequence length	51
%GC	43

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCCCACTACCACAAATTATGCAGTCGAGTTTCCCACATTTGGGGAAATCGC	186047	0.4813491343272924	No Hit
CCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATGC	129946	0.33620211349440915	No Hit
CCCACTACCACAAATTATGCAGTCGAGTTTCCCACATTTGGGGAAATCGCA	127419	0.3296641458709319	No Hit
CCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATT	124140	0.32118057015372503	No Hit
CCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTG	111777	0.2891944626234326	No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACAGCCTCATATCTCGTATG	91932	0.23785058945845214	TruSeq Adapter, Index 13 (97% over 37bp)
CCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGA	77665	0.20093836781850372	No Hit
GTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCACGGGAGTTTTGAC	74693	0.19324907625658275	No Hit
GCTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGT	73861	0.19109648857841377	No Hit
GTCCCCCACTACCACAAATTATGCAGTCGAGTTTCCCACATTTGGGGAAAT	56126	0.14521170195302055	No Hit
CTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGTC	52433	0.13565700688634014	No Hit
CCACTACCACAAATTATGCAGTCGAGTTTCCCACATTTGGGGAAATCGCAG	49080	0.12698197505352687	No Hit
CCACAAATTATGCAGTCGAGTTTCCCACATTTGGGGAAATCGCAGGGGTCA	48956	0.1266611566976459	No Hit
CTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGAT	43795	0.11330838625650386	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TCGCGTA	3610	41.13139	43
TATCGCG	3635	40.66226	41
CGCGTAT	3715	40.21105	44
CGTCTGA	14945	38.79256	16
TATCTCG	10975	38.681015	41
ACACGTC	15245	38.20626	13
ATCGCGT	3890	38.054565	42
TCGTATG	11195	37.92136	45
TCTCGTA	11270	37.66905	43
ATCTCGT	11400	37.298164	42
ACGTCTG	15790	36.77357	15
CACGTCT	16145	35.992855	14
GCACACG	16680	34.919334	11
GATCGGA	16830	34.467365	1
TCGGAAG	17170	33.923107	3
ATATCGC	4400	33.89935	40
CACACGT	17470	33.391777	12
ATCGGAA	17470	33.28214	2
CTCGTAT	14320	29.913004	44
CATATCG	5150	29.093603	39