Basic Statistics
Measure | Value |
---|---|
Filename | EGAF00004966790 |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 29442330 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 45 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGGAGATACCATGATCACGAAGGTGGTTTTCCCAGGGCGAGGCTTATCCAT | 141592 | 0.4809130255655717 | No Hit |
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG | 120224 | 0.4083372477653773 | No Hit |
AGGGGAGATACCATGATCACGAAGGTGGTTTTCCCAGGGCGAGGCTTATCC | 96009 | 0.32609171896381844 | No Hit |
GGGGAGATACCATGATCACGAAGGTGGTTTTCCCAGGGCGAGGCTTATCCA | 76440 | 0.2596261912695089 | No Hit |
GGAGATACCATGATCACGAAGGTGGTTTTCCCAGGGCGAGGCTTATCCATT | 72492 | 0.24621692644569912 | No Hit |
CCATGATCACGAAGGTGGTTTTCCCAGGGCGAGGCTTATCCATTGCACTCC | 71239 | 0.24196114913459635 | No Hit |
GGTCGACCCGTGCGGAGGAGCGAGGAGGAAGGACGCGCGAGGGCCGGGACC | 40111 | 0.13623582101008988 | No Hit |
ACCATGATCACGAAGGTGGTTTTCCCAGGGCGAGGCTTATCCATTGCACTC | 37282 | 0.12662720647448758 | No Hit |
TGATCACGAAGGTGGTTTTCCCAGGGCGAGGCTTATCCATTGCACTCCGGA | 34797 | 0.11818697772900447 | No Hit |
CGGAAACCTTGTTACGACTTTTACTTCCTCTAGATAGTCAAGTTCGACCGT | 29956 | 0.10174466490933291 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGGCGAT | 2650 | 0.0 | 24.36786 | 1 |
AGGGGAG | 22170 | 0.0 | 22.662323 | 1 |
TATACGC | 2315 | 0.0 | 20.507437 | 7 |
GCGGCAT | 5445 | 0.0 | 20.454529 | 29 |
TACGCTA | 2370 | 0.0 | 19.93659 | 9 |
AACGCTG | 6165 | 0.0 | 19.854267 | 22 |
ACGCTGG | 6640 | 0.0 | 18.535627 | 23 |
CGCTGGC | 6605 | 0.0 | 18.395452 | 24 |
ATATACG | 2630 | 0.0 | 18.051254 | 6 |
ATACGCT | 2695 | 0.0 | 17.866314 | 8 |
GCTGGCG | 7010 | 0.0 | 17.525246 | 25 |
GGTGGCG | 5050 | 0.0 | 17.331638 | 1 |
GGTCGAC | 10805 | 0.0 | 17.325268 | 1 |
TTCCGCA | 5440 | 0.0 | 17.164448 | 3 |
TGGCGGC | 7120 | 0.0 | 17.09625 | 27 |
CTGGCGG | 7225 | 0.0 | 16.97236 | 26 |
ACGCTAT | 2870 | 0.0 | 16.933697 | 10 |
GGGAGAT | 46155 | 0.0 | 16.930408 | 1 |
GGCGGCA | 6945 | 0.0 | 16.911432 | 28 |
CGATCTG | 3690 | 0.0 | 16.890171 | 4 |