FastQCFastQC Report
Thu 12 May 2022
EGAF00004969276

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004969276
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences34687185
Sequences flagged as poor quality0
Sequence length100
%GC52

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTGACCAATCTCGTATGC2466300.7110118621617754TruSeq Adapter, Index 4 (100% over 50bp)
CTAACACGTGCGCGAGTCGGGGGCTCGCACGAAAGCCGCCGTGGCGCAAT538750.1553167257590952No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)