FastQCFastQC Report
Thu 2 May 2024
EGAF00004969291

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004969291
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences31854128
Total Bases3.1 Gbp
Sequences flagged as poor quality0
Sequence length100
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN848200.26627632060748924No Hit
CTCACACTTGTTCACCAATCTCTAAGATGAAAAACTCTCTTCCAAAATGT529860.16633950865018185No Hit
CCTCACACTTGTTCACCAATCTCTAAGATGAAAAACTCTCTTCCAAAATG416220.1306643835926069No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)