FastQCFastQC Report
Tue 7 May 2024
EGAF00004969414

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004969414
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences54844
Total Bases13.1 Mbp
Sequences flagged as poor quality0
Sequence length239
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGTCAGCAGCCGCGGTAATACGTAGGGTGCGAGCGTTGTCCGGAATTAC1674930.539347968784185No Hit
GTGTCAGCCGCCGCGGTAATACGTAGGGTGCGAGCGTTGTCCGGAATTAC1300523.712712420684124No Hit
GTGCCAGCAGCCGCGGTAATACGTAGGGTGCGAGCGTTGTCCGGAATTAC920216.7784990153891No Hit
GTGCCAGCCGCCGCGGTAATACGTAGGGTGCGAGCGTTGTCCGGAATTAC760613.868426810590037No Hit
GTGTCAGCAGCCGCGGTAATACATAGGTCGCAAGCGTTATCCGGAATTAT12762.3265990810298303No Hit
GTGTCAGCCGCCGCGGTAATACATAGGTCGCAAGCGTTATCCGGAATTAT10141.848880460943768No Hit
GTGCCAGCAGCCGCGGTAATACATAGGTCGCAAGCGTTATCCGGAATTAT7431.3547516592516957No Hit
GTGCCAGCCGCCGCGGTAATACATAGGTCGCAAGCGTTATCCGGAATTAT5921.0794252789730874No Hit
GTGTCAGCAGCCGCGGTAATACCTAGGTCGCAAGCGTTATCCGGAATTAT1400.2552694916490409No Hit
GTGTCAGCAGCCGCGGTAACACGATTAACCCAAGTCAATAGAAGCCGGCG1210.2206257749252425No Hit
GTGTCAGCAGCCGCGGTAATACATAGGATGCAAGCGTTATCCGGATTTAC1020.1859820582014441No Hit
GTGTCAGCCGCCGCGGTAATACCTAGGTCGCAAGCGTTATCCGGAATTAT970.17686529064254977No Hit
GTGTCAGCCGCCGCGGTAACACGATTAACCCAAGTCAATAGAAGCCGGCG910.1659251695718766No Hit
GTGTCAGCCGCCGCGGTAATACATAGGATGCAAGCGTTATCCGGATTTAC880.16045510903654No Hit
GTGCCAGCAGCCGCGGTAATACATAGGATGCAAGCGTTATCCGGATTTAC790.14404492743053024No Hit
GTGCCAGCAGCCGCGGTAACACGATTAACCCAAGTCAATAGAAGCCGGCG730.13310480635985705No Hit
GTGCCAGCAGCCGCGGTAATACCTAGGTCGCAAGCGTTATCCGGAATTAT670.12216468528918387No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)