FastQCFastQC Report
Thu 1 Sep 2022
EGAF00004969508

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004969508
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences434
Sequences flagged as poor quality0
Sequence length239
%GC52

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGTCAGCCGCCGCGGTAATACAGAGGGTGCAAGCGTTAATCGGAATTAC11125.57603686635945No Hit
GTGTCAGCAGCCGCGGTAATACAGAGGGTGCAAGCGTTAATCGGAATTAC10724.65437788018433No Hit
GTGCCAGCAGCCGCGGTAATACAGAGGGTGCAAGCGTTAATCGGAATTAC8820.276497695852534No Hit
GTGCCAGCCGCCGCGGTAATACAGAGGGTGCAAGCGTTAATCGGAATTAC5512.672811059907835No Hit
GTGTCAGCCGCCGCGGTAATACCGAGGGTGCAAGCGTTAATCGGAATTAC122.7649769585253456No Hit
GTGCCAGCCGCCGCGGTAATACCGAGGGTGCAAGCGTTAATCGGAATTAC81.8433179723502304No Hit
GTGTCAGCAGCCGCGGTAATACCGAGGGTGCAAGCGTTAATCGGAATTAC81.8433179723502304No Hit
GTGCCAGCAGCCGCGGTAATACCGAGGGTGCAAGCGTTAATCGGAATTAC81.8433179723502304No Hit
GTGTCAGCAGCCGCGGTAATACGGAGGGAGCTAGCGTTATTCGGAATTAC51.1520737327188941No Hit
GTGTCAGCCGCCGCGGTAATACGGAGGGAGCTAGCGTTATTCGGAATTAC30.6912442396313364No Hit
GTGCCAGCCGCCGCGGTAATACGGAGGGAGCTAGCGTTATTCGGAATTAC20.4608294930875576No Hit
GTGCCAGCCGCCGCGGTAATACAGAGGGTGTAAGCGTTAATCGGAATTAC10.2304147465437788No Hit
TGCCAGCCGCCGCGGTAATACAGAGGGTGCAAGCGTTAATCGGAATTACT10.2304147465437788No Hit
GTGTCAGCCGCCGCGGTAATACGGAGGGAGCTAGCGTTATTCGAAATTAC10.2304147465437788No Hit
GTGTCAGCAGCCGCGGTAATACAGAGGGTGCAGGCGTTAATCGGAATTAC10.2304147465437788No Hit
GTGTCAGCAGCCGCGGTAATACGGAGGGTGCAAGCGTTAATCGGAATTAC10.2304147465437788No Hit
GTGCCAGCCGCCGCGGTAATACAGAGGGTGCGAGCGTTAATCGGAATTAC10.2304147465437788No Hit
GTGCCAGCAGCCGCGGTAATACGTAGGTGGCAAGCGTTATCCGGAATTAT10.2304147465437788No Hit
GTGCCAGCAGCCGCGGTAATACGGAGGGAGCTAGCGTTATTCGGAATTAC10.2304147465437788No Hit
GCGCCAGCAGCCGCGGTAATACAGAGGGTGCAAGCGTTAATCGGAATTAC10.2304147465437788No Hit
GTGTCAGCAGCCGCGGTAATACGTAGGTGGCAAGCGTTATCCGGAATTAT10.2304147465437788No Hit
GTGCCAGCAGCCGCGGTAATACGGAGGGTGCAAGCGTTAATCGGAATTAC10.2304147465437788No Hit
GTGCCAGCAGCCGCGGTAATACAGAGGGTGCAAGCGTTAATCGGAATTAT10.2304147465437788No Hit
GTGCCAGCCGCCGCGGTAATACAGAGGGTGCAAGAGTTAATCGGAATTAC10.2304147465437788No Hit
GTGTCAGCAGCCGCGGTAACACAGAGGGTGCAAGCGTTAATCGGAATTAC10.2304147465437788No Hit
GTGTCAGCAGCCGCGGTAATACAGAGGGTGCAAGCGTAAATCGGAATTAC10.2304147465437788No Hit
GTGTCAGCCGCCGCGGTAATACGTATGTCACGAGCGTTATCCGGATTTAT10.2304147465437788No Hit
GTGTCAGCCGCCGCGGTAATACAGAGGGTGCAGGCGTTAATCGGAATTAC10.2304147465437788No Hit
GTGTCAGCAGCCGTGGTAATACAGAGGGTGCAAGCGTTAATCGGAATTAC10.2304147465437788No Hit
GTGTCAGCCGCCGCGGTAATACGTAGGGTGCGAGCGTTGTCCGGAATTAC10.2304147465437788No Hit
GTGTAGCAGCCGCGGTAATACAGAGGGTGCAAGCGTTAATCGGAATTACT10.2304147465437788No Hit
GAGTCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTATTCGGAATTAC10.2304147465437788No Hit
GTGCCAGCAGCCGCGGTGATCCTGAGGGAGCTAGGGTTATTCGGCATTGG10.2304147465437788No Hit
GTGCTAGCCGCCGCGGTAATACAGAGGGTGCAAGCGTTAATCGGAATTAC10.2304147465437788No Hit
TTCAGCCGCCGCGGTAATACAGCGGGTGCAAGCGTTAATCGGAATTACTG10.2304147465437788No Hit
GTGACAGCAGCCGCGGTAATACGTAGGTGGCAAGCGTTATCCGGAATTAT10.2304147465437788No Hit
TGTCAGCCGCCGCGGTAATACAGAGGGTGCAAGCGTTAATCGGCATTACT10.2304147465437788No Hit
GTGGTCAGCAGCCGCGGTAATACAGAGGGTGCAAGCGTTAATCGGAATTA10.2304147465437788No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)