FastQCFastQC Report
Thu 1 Sep 2022
EGAF00004969560

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004969560
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences99791
Sequences flagged as poor quality0
Sequence length239
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGTCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTGTCCGGAATTAC2473524.786804421240394No Hit
GTGTCAGCCGCCGCGGTAATACGTAGGGTGCAAGCGTTGTCCGGAATTAC2308323.131344510025954No Hit
GTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTGTCCGGAATTAC1641816.45238548566504No Hit
GTGCCAGCCGCCGCGGTAATACGTAGGGTGCAAGCGTTGTCCGGAATTAC1635316.38724935114389No Hit
GTGTCAGCAGCCGCGGTAATACGTAGGTGGCAAGCGTTATCCGGAATTAT21882.192582497419607No Hit
GTGTCAGCCGCCGCGGTAATACGTAGGTGGCAAGCGTTATCCGGAATTAT19992.00318666011965No Hit
GTGCCAGCCGCCGCGGTAATACGTAGGTGGCAAGCGTTATCCGGAATTAT13951.3979216562615868No Hit
GTGCCAGCAGCCGCGGTAATACGTAGGTGGCAAGCGTTATCCGGAATTAT13491.351825314908158No Hit
GTGTCAGCAGCCGCGGTAATACGTAGGGTGCGAGCGTTGTCCGGAATTAC13231.3257708610996983No Hit
GTGTCAGCCGCCGCGGTAATACGTAGGGTGCGAGCGTTGTCCGGAATTAC12031.2055195358298845No Hit
GTGCCAGCAGCCGCGGTAATACGTAGGGTGCGAGCGTTGTCCGGAATTAC9030.9048912226553497No Hit
GTGCCAGCCGCCGCGGTAATACGTAGGGTGCGAGCGTTGTCCGGAATTAC8330.8347446162479581No Hit
GTGTCAGCAGCCGCGGTAATACGTAGGTGGCAAGTGTTATCCGGAATTAT4510.4519445641390506No Hit
GTGTCAGCCGCCGCGGTAATACGTAGGTGGCAAGTGTTATCCGGAATTAT4340.434908959725827No Hit
GTGCCAGCCGCCGCGGTAATACGTAGGTGGCAAGTGTTATCCGGAATTAT3120.31265344570151615No Hit
GTGCCAGCAGCCGCGGTAATACGTAGGTGGCAAGTGTTATCCGGAATTAT3020.3026325019290317No Hit
GTGTCAGCCGCCGCGGTAATACGTAGGTGACAAGCGTTGTCCGGATTTAT1730.17336232726398174No Hit
GTGTCAGCAGCCGCGGTAATACGTAGGTGACAAGCGTTGTCCGGATTTAT1660.16634766662324257No Hit
GTGCCAGCAGCCGCGGTAATACGTAGGTGACAAGCGTTGTCCGGATTTAT1330.13327855217404375No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)