FastQCFastQC Report
Thu 1 Sep 2022
EGAF00004969596

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004969596
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences36271
Sequences flagged as poor quality0
Sequence length239
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGTCAGCCGCCGCGGTAATACGTAGGGTGCAAGCGTTGTCCGGAATTAC800422.06721623335447No Hit
GTGTCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTGTCCGGAATTAC725920.013233712883572No Hit
GTGCCAGCCGCCGCGGTAATACGTAGGGTGCAAGCGTTGTCCGGAATTAC680218.753273965426924No Hit
GTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTGTCCGGAATTAC571815.764660472553832No Hit
GTGTCAGCAGCCGCGGTAATACGTAGGTGGCAAGCGTTATCCGGAATTAT9672.6660417413360538No Hit
GTGTCAGCCGCCGCGGTAATACGTAGGTGGCAAGCGTTATCCGGAATTAT8902.453750930495437No Hit
GTGCCAGCAGCCGCGGTAATACGTAGGTGGCAAGCGTTATCCGGAATTAT7572.0870668026798267No Hit
GTGCCAGCCGCCGCGGTAATACGTAGGTGGCAAGCGTTATCCGGAATTAT7131.9657577679137603No Hit
GTGTCAGCCGCCGCGGTAATACGTAGGGTGCGAGCGTTGTCCGGAATTAC3400.9373879959196052No Hit
GTGTCAGCAGCCGCGGTAATACGTAGGGTGCGAGCGTTGTCCGGAATTAC3290.9070607372280887No Hit
GTGCCAGCCGCCGCGGTAATACGTAGGGTGCGAGCGTTGTCCGGAATTAC2980.8215930081883599No Hit
GTGCCAGCAGCCGCGGTAATACGTAGGGTGCGAGCGTTGTCCGGAATTAC2800.771966584874969No Hit
GTGTCAGCAGCCGCGGTAATACGTAGGTGGCAAGTGTTATCCGGAATTAT2130.5872460092084585No Hit
GTGTCAGCCGCCGCGGTAATACGTAGGTGGCAAGTGTTATCCGGAATTAT1850.5100493507209617No Hit
GTGCCAGCAGCCGCGGTAATACGTAGGTGGCAAGTGTTATCCGGAATTAT1440.39701138650712686No Hit
GTGCCAGCCGCCGCGGTAATACGTAGGTGGCAAGTGTTATCCGGAATTAT1430.3942543629897163No Hit
GTGTCAGCAGCCGCGGTAATACGTAGGTGACAAGCGTTGTCCGGATTTAT760.20953378732320588No Hit
GTGTCAGCCGCCGCGGTAATACGTAGGTGACAAGCGTTGTCCGGATTTAT590.1626643875272256No Hit
GTGCCAGCCGCCGCGGTAATACGTAGGTGACAAGCGTTGTCCGGATTTAT530.14612224642276198No Hit
GTGCCAGCAGCCGCGGTAATACGTAGGTGACAAGCGTTGTCCGGATTTAT530.14612224642276198No Hit
GTGTCAGCAGCCGCGGTCATACGTAGGGTGCAAGCGTTGTCCGGAATTAC390.10752391717901355No Hit
GTGTCAGCCGCCGCGGTAATACGTAGGGTGCAAGCGTTGTCCGGAATTAT370.10200987014419233No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)