FastQCFastQC Report
Wed 8 May 2024
EGAF00004969598

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004969598
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences82630
Total Bases19.7 Mbp
Sequences flagged as poor quality0
Sequence length239
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGTCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTGTCCGGAATTAC2034924.626648916858286No Hit
GTGTCAGCCGCCGCGGTAATACGTAGGGTGCAAGCGTTGTCCGGAATTAC1872122.656420186372987No Hit
GTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTGTCCGGAATTAC1336616.175723102989227No Hit
GTGCCAGCCGCCGCGGTAATACGTAGGGTGCAAGCGTTGTCCGGAATTAC1313415.894953406752995No Hit
GTGTCAGCAGCCGCGGTAATACGTAGGTGGCAAGCGTTATCCGGAATTAT20712.506353624591553No Hit
GTGTCAGCCGCCGCGGTAATACGTAGGTGGCAAGCGTTATCCGGAATTAT18592.249788212513615No Hit
GTGCCAGCAGCCGCGGTAATACGTAGGTGGCAAGCGTTATCCGGAATTAT13681.6555730364274477No Hit
GTGCCAGCCGCCGCGGTAATACGTAGGTGGCAAGCGTTATCCGGAATTAT12971.569647827665497No Hit
GTGTCAGCAGCCGCGGTAATACGTAGGGTGCGAGCGTTGTCCGGAATTAC10701.294929202468837No Hit
GTGTCAGCCGCCGCGGTAATACGTAGGGTGCGAGCGTTGTCCGGAATTAC9671.1702771390536124No Hit
GTGCCAGCAGCCGCGGTAATACGTAGGGTGCGAGCGTTGTCCGGAATTAC7110.8604623018274236No Hit
GTGCCAGCCGCCGCGGTAATACGTAGGGTGCGAGCGTTGTCCGGAATTAC6820.8253660897978943No Hit
GTGTCAGCAGCCGCGGTAATACGTAGGTGGCAAGTGTTATCCGGAATTAT4250.5143410383637904No Hit
GTGTCAGCCGCCGCGGTAATACGTAGGTGGCAAGTGTTATCCGGAATTAT3740.45262011376013556No Hit
GTGCCAGCAGCCGCGGTAATACGTAGGTGGCAAGTGTTATCCGGAATTAT2870.3473314776715479No Hit
GTGCCAGCCGCCGCGGTAATACGTAGGTGGCAAGTGTTATCCGGAATTAT2700.3267578361369962No Hit
GTGTCAGCAGCCGCGGTAATACGTAGGTGACAAGCGTTGTCCGGATTTAT1550.18758320222679414No Hit
GTGTCAGCCGCCGCGGTAATACGTAGGTGACAAGCGTTGTCCGGATTTAT1450.17548106014764614No Hit
GTGCCAGCAGCCGCGGTAATACGTAGGTGACAAGCGTTGTCCGGATTTAT1060.1282827060389689No Hit
GTGCCAGCCGCCGCGGTAATACGTAGGTGACAAGCGTTGTCCGGATTTAT920.11133970712816169No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)