FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004969754

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004969754
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17459001
Sequences flagged as poor quality0
Sequence length101
%GC52

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTATCA129000.010.78579794-95
CGCCGTA181250.09.6676994-95
GCCGTAT161850.09.65289494-95
CCGTATC149650.09.63066694-95
TCGCCGT216150.09.128304594-95
GTATCAT143750.09.08446194-95
GTCGCCG248250.08.46444294-95
TGGTCGC295000.07.91985994-95
GGTCGCC276850.07.787277794-95
GTGGTCG334450.07.48972194-95
TATCATT160500.07.145233694-95
TCGGTGG447250.06.912019794-95
ATCATTA141750.06.78385194-95
TCTCGGT501650.06.683103694-95
CGGTGGT417450.06.671720594-95
CTCGGTG502950.06.6658394-95
ATCTCGG550950.06.33504294-95
GATCTCG581750.06.322070694-95
TAGATCT662550.05.981113494-95
GGTGGTC465050.05.799933494-95
Produced by FastQC (version 0.11.5)