FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004969757

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004969757
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17158875
Sequences flagged as poor quality0
Sequence length101
%GC52

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTATCA116350.010.3396694-95
GCCGTAT148300.010.30408494-95
CCGTATC136250.09.85699694-95
CGCCGTA166600.09.72770494-95
TCGCCGT197450.08.58036494-95
GTATCAT133950.08.32568294-95
TGGTCGC270600.08.15492294-95
GTCGCCG225350.07.91817394-95
GTGGTCG308500.07.71454794-95
GGTCGCC254950.07.594510694-95
ATCATTA131500.07.271834494-95
TATCATT149450.07.097023594-95
TCTCGGT472050.07.00711894-95
CGGTGGT390150.06.957593494-95
TCGGTGG419350.06.914475494-95
ATCTCGG520850.06.746943594-95
CTCGGTG473300.06.612611394-95
GATCTCG546750.06.51413294-95
TAGATCT631050.06.384671794-95
TCATTAA140000.06.355766394-95
Produced by FastQC (version 0.11.5)