FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004969760

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004969760
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12625609
Sequences flagged as poor quality0
Sequence length101
%GC51

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATGCCGT142150.010.82571594-95
CGTATGC190700.010.65986194-95
TATGCCG148150.010.65978594-95
TCGTATG212200.010.18414294-95
TGCCGTC141050.010.01779994-95
GCCGTCT125950.09.61613394-95
GTATGCC185300.09.48385194-95
CTCGTAT235450.09.45081694-95
CCGTCTT112700.09.1241594-95
TATCTCG313850.08.92870294-95
TCTCGTA260850.08.86740694-95
ATCTCGT298450.08.736937594-95
CGTCTTC119950.08.17670394-95
ATATCTC377050.07.81630194-95
GATATCT404700.07.72824894-95
TGATATC442000.07.602608794-95
CGTGATA512100.07.31316594-95
GTGATAT481600.07.169789394-95
ACGTGAT569150.06.934780694-95
AACGTGA620000.06.737559394-95
Produced by FastQC (version 0.11.5)