FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004969765

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004969765
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16901622
Sequences flagged as poor quality0
Sequence length101
%GC52

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTATCA110400.010.08739294-95
CGCCGTA157800.09.95616194-95
GCCGTAT139300.09.95456994-95
CCGTATC129000.09.8582594-95
TCGCCGT189750.09.20112194-95
GTCGCCG220300.08.68614994-95
GGTCGCC246350.08.42871894-95
TGGTCGC260150.08.08287194-95
GTATCAT128350.07.780996394-95
GTGGTCG295200.07.682961594-95
ATCATTA132150.07.08605694-95
CGGTGGT376700.06.91716794-95
TCGGTGG404800.06.91622394-95
TCTCGGT452250.06.79427594-95
TATCATT147200.06.76831594-95
CTCGGTG460850.06.68307694-95
GATCTCG526100.06.2957794-95
ATCTCGG496050.06.257120694-95
TCATTAA136450.06.143127494-95
GGTGGTC420650.06.063504794-95
Produced by FastQC (version 0.11.5)