FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004969768

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004969768
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16928704
Sequences flagged as poor quality0
Sequence length101
%GC52

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG125350.010.51453794-95
TCGTATG174950.010.37052994-95
CGTATGC156800.010.22302194-95
CTCGTAT195700.09.52577594-95
GTATGCC165100.08.81728694-95
TCTCGTA215650.08.74364694-95
ATGCCGT131900.08.39001394-95
ATCTCGT249200.08.01437194-95
GCCGTCT124550.07.931788494-95
TGCCGTC139050.07.617024494-95
CCGTCTT114600.07.563620694-95
CATCTCG300000.07.25887994-95
ACGCCAA581850.06.34659694-95
ACATCTC383800.06.28033194-95
AGACATC419850.06.278419594-95
GACATCT401700.06.160094394-95
CGCCAAG567450.06.126817794-95
CACGCCA671150.05.95505894-95
AAGACAT460000.05.900786494-95
AGTCACG758050.05.88327694-95
Produced by FastQC (version 0.11.5)