FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004969769

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004969769
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16928704
Sequences flagged as poor quality0
Sequence length101
%GC52

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCCGTA155850.010.36213694-95
GCCGTAT137650.010.33469794-95
CGTATCA108500.010.22196294-95
CCGTATC130850.010.05502594-95
TCGCCGT189650.09.742578594-95
GTCGCCG218600.08.74566694-95
GTATCAT128100.08.41693394-95
GGTCGCC248750.08.067533594-95
TGGTCGC259400.07.946884694-95
GTGGTCG298950.07.586683394-95
TATCATT142250.07.212380494-95
ATCATTA127200.07.05751594-95
TCGGTGG404850.07.02764594-95
CGGTGGT377000.07.005039794-95
ATCTCGG499550.06.50836194-95
TCTCGGT452900.06.491804694-95
CTCGGTG456350.06.43752394-95
GATCTCG527500.06.321087494-95
TAGATCT599700.06.24913894-95
GGTGGTC425300.06.036391794-95
Produced by FastQC (version 0.11.5)