FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004969771

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004969771
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16737028
Sequences flagged as poor quality0
Sequence length101
%GC51

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTATCA110500.010.68166494-95
GCCGTAT142700.010.66789894-95
CCGTATC132350.010.01278994-95
CGCCGTA156550.09.75444994-95
GTATCAT127250.08.75305994-95
GTCGCCG216600.08.32200894-95
TCGCCGT187000.08.3057994-95
GGTCGCC245700.08.25462894-95
TGGTCGC259800.07.998595794-95
GTGGTCG296500.07.473116494-95
TATCATT142800.07.101408594-95
TCTCGGT444350.07.00684294-95
CGGTGGT373500.06.975267494-95
TCGGTGG397000.06.891389494-95
ATCATTA127850.06.74296294-95
ATCTCGG491550.06.64323894-95
GATCTCG523450.06.451626394-95
CTCGGTG447050.06.427973394-95
TAGATCT596700.06.22082294-95
AGATCTC605150.05.992676394-95
Produced by FastQC (version 0.11.5)