FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004969774

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004969774
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12042666
Sequences flagged as poor quality0
Sequence length101
%GC50

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG74250.010.71446494-95
CTCGTAT112850.09.70111194-95
TCGTATG100650.09.01304894-95
CGTATGC91550.08.76759394-95
TCTCGTA126550.08.63212794-95
AATCTCG158750.08.6015494-95
ATGCCGT78200.08.53339194-95
GTATGCC100950.08.4687394-95
ATCTCGT149750.08.00841694-95
TCGAATC198300.07.999739694-95
CGAATCT184750.07.95661494-95
TTCGAAT218900.07.637460794-95
CCGTCTT70550.07.506369694-95
CTTCGAA253550.07.43667894-95
TGCCGTC81550.07.25099394-95
ACTTCGA277350.07.072516494-95
GCCGTCT76150.07.047914594-95
CACTTCG302000.06.896278494-95
GTAGAGA119700.06.86777351
GAATCTC212650.06.722846594-95
Produced by FastQC (version 0.11.5)