FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004969775

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004969775
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12042666
Sequences flagged as poor quality0
Sequence length101
%GC50

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCCGTAT83000.010.37780594-95
CCGTATC77200.09.95874694-95
CGTATCA66650.09.75500294-95
CGCCGTA90100.08.98062494-95
GTCGCCG125550.08.97746894-95
TCGCCGT107800.08.38654794-95
GGTCGCC145000.08.26419194-95
TGGTCGC152200.08.23182794-95
GTGGTCG176700.08.00362494-95
GTATCAT84050.07.31204894-95
CGGTGGT224350.07.07582494-95
TCGGTGG240650.07.000828394-95
TCTCGGT269100.06.98374694-95
CTCGGTG272350.06.551902394-95
GTAGAGA122250.06.54076671
GATCTCG324450.06.48713394-95
ATCTCGG307450.06.4676594-95
GTACGTT9100.00179221816.35198261
TAGATCT368700.06.313538694-95
GGTGGTC258800.05.96889194-95
Produced by FastQC (version 0.11.5)