FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004969779

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004969779
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11851758
Sequences flagged as poor quality0
Sequence length101
%GC50

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCCGTA87400.010.27651694-95
CGTATCA63100.010.17258994-95
GCCGTAT79450.010.1592694-95
CCGTATC72800.09.83707394-95
TCGCCGT107500.08.9788994-95
ATACACG14900.08.7184571
GTCGCCG120650.08.41714194-95
TGGTCGC146800.08.33721394-95
GGATACG11653.2403477E-87.84675031
GTGGTCG169950.07.708896694-95
GGTCGCC139450.07.677416394-95
CGGTGGT211400.07.13775594-95
TCGGTGG225850.07.08406394-95
GTAGAGA125700.07.00451371
TATCGGT7050.0081964366.7345862
GTATCAT80600.06.715826594-95
TCTCGGT255000.06.67813994-95
TAGAGAC89850.06.65813352
GATCTCG306150.06.6185494-95
ATCTCGG294350.06.607209794-95
Produced by FastQC (version 0.11.5)