FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004969783

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004969783
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11834576
Sequences flagged as poor quality0
Sequence length101
%GC50

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCCGTA84650.010.29610594-95
GCCGTAT77650.010.27617994-95
CGTATCA60800.09.99931594-95
CCGTATC70900.09.47925294-95
TCGCCGT104150.09.07523194-95
TGGTCGC146700.08.40177794-95
GTCGCCG124000.08.082108594-95
GTGGTCG169400.07.93481794-95
GGTCGCC138400.07.721653594-95
GTATCAT77200.07.38291494-95
TCTCGGT257150.07.221944394-95
TCGGTGG227350.07.176218594-95
CGGTGGT213750.07.16617694-95
GTAGAGA123300.07.11829141
CTCGGTG260900.06.78134994-95
GATTACG7150.0080787436.74468041
ATACGCT8100.00368612566.5490021
ATCTCGG293000.06.50851494-95
GATCTCG309650.06.411639794-95
TAGAGAC89250.06.38602352
Produced by FastQC (version 0.11.5)