FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004969787

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004969787
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13992592
Sequences flagged as poor quality0
Sequence length101
%GC51

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTATCA89300.010.82122894-95
CCGTATC108300.010.32585694-95
CGCCGTA130500.09.67909494-95
GCCGTAT116150.09.64842594-95
TCGCCGT152550.08.94930494-95
GTATCAT105800.08.50525194-95
GGTCGCC201150.08.09725394-95
TGGTCGC209700.07.99355394-95
GTCGCCG178100.07.958734594-95
GTGGTCG240200.07.48266994-95
CGGTGGT305550.07.141128594-95
TCGGTGG331100.07.056178694-95
TCTCGGT372650.06.97027394-95
ATCTCGG410150.06.67452394-95
CTCGGTG371450.06.602882494-95
ATCATTA110550.06.59345894-95
GATCTCG436850.06.511155694-95
TATCATT125000.06.43907294-95
TAGATCT502250.06.230588494-95
GGTGGTC339600.06.061568394-95
Produced by FastQC (version 0.11.5)