FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004969790

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004969790
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13793603
Sequences flagged as poor quality0
Sequence length101
%GC51

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCGTATG127900.010.04504994-95
CGTATGC115100.010.00672194-95
CTCGTAT140750.09.5497894-95
TATGCCG93500.09.39756894-95
AATCTCG196700.08.64438294-95
ATCTCGT184450.08.56186494-95
TCTCGTA159700.08.44634394-95
ATGCCGT99150.08.43092694-95
GTATGCC125800.07.890799594-95
CTAGTAA321650.07.479132794-95
ACTAGTA344550.07.3680294-95
CCGTCTT90400.07.355546594-95
CGACTAG388750.07.281673494-95
GCCGTCT96600.07.252207894-95
GTAATCT256200.07.239311794-95
TAATCTC253300.07.07843394-95
ACGACTA422900.07.069901594-95
AGTAATC269400.07.01682894-95
GACTAGT366250.07.015763894-95
TGCCGTC107300.06.993791694-95
Produced by FastQC (version 0.11.5)