FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004969791

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004969791
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13793603
Sequences flagged as poor quality0
Sequence length101
%GC51

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTATCA82400.09.96388694-95
CGCCGTA115700.09.94691294-95
GCCGTAT101700.09.58960694-95
CCGTATC95100.09.55648494-95
TCGCCGT140550.09.184340594-95
TGGTCGC193900.08.54196194-95
GTCGCCG162750.08.42726694-95
GTGGTCG221600.07.96678594-95
GGTCGCC183250.07.89888594-95
GTATCAT100700.07.54050594-95
TCTCGGT340950.07.057114694-95
CGGTGGT284400.06.933480794-95
ATCTCGG377350.06.81655394-95
TCGGTGG304150.06.654893494-95
GATCTCG397250.06.630388394-95
TAGATCT461350.06.50124494-95
ATCATTA107350.06.476576394-95
CTCGGTG344550.06.439308694-95
AGATCTC469950.06.13990794-95
TATCATT119000.06.041928394-95
Produced by FastQC (version 0.11.5)