FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004969793

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004969793
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13637899
Sequences flagged as poor quality0
Sequence length101
%GC51

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCCGTA110150.010.91434794-95
GCCGTAT97350.010.65198394-95
CGTATCA75850.010.48240794-95
TCGCCGT130850.09.8649294-95
CCGTATC89650.09.45652394-95
GTCGCCG152850.08.50771494-95
TGGTCGC182600.08.236494-95
GGTCGCC174350.07.98054894-95
GTATCAT94350.07.74170294-95
GTGGTCG208950.07.61034394-95
TCGGTGG284300.07.446529494-95
TCTCGGT322200.07.217257594-95
CGGTGGT262950.07.094843494-95
ATCTCGG359600.06.919494694-95
CTCGGTG327000.06.81104494-95
GATCTCG377800.06.801681594-95
TAGATCT441000.06.598059794-95
AGATCTC446950.06.29589494-95
ATCATTA102800.06.196793694-95
GTAGATC565800.05.85803194-95
Produced by FastQC (version 0.11.5)