FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004969796

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004969796
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11792431
Sequences flagged as poor quality0
Sequence length101
%GC50

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTATGC85300.010.88554594-95
TCGTATG94050.09.84755194-95
TATGCCG65900.09.76740392-93
ATGCCGT73150.09.41469294-95
CTCGTAT103150.09.04785894-95
AATCTCG149700.08.67736794-95
TCGAATC186100.08.49865694-95
ATCTCGT137850.08.47580294-95
TCTCGTA119050.08.39798694-95
GTATGCC93550.08.32630894-95
CGAATCT171000.08.2908894-95
TGCCGTC79900.08.23294994-95
TTCGAAT208150.08.07754394-95
CTTCGAA242750.07.787109494-95
ACTTCGA265000.07.357321794-95
GCCGTCT70800.07.245075794-95
CACTTCG289650.06.92796494-95
CCGTCTT64550.06.769304394-95
GAATCTC201600.06.737952794-95
GTAGAGA117100.06.6872331
Produced by FastQC (version 0.11.5)