FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004969800

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004969800
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13534572
Sequences flagged as poor quality0
Sequence length101
%GC51

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG86800.010.20501694-95
TCGTATG119650.09.52693494-95
CGTATGC106950.09.3703694-95
CTCGTAT133950.09.32540394-95
ATGCCGT92300.08.79931794-95
GTATGCC119450.08.48919194-95
AATCTCG182500.08.3800794-95
TCTCGTA149700.08.09045594-95
ATCTCGT173500.07.96614394-95
AGTAATC253200.07.75651194-95
GTAATCT237750.07.521406794-95
ACTAGTA322650.07.455939394-95
CTAGTAA307450.07.25296794-95
CGACTAG363600.07.190979594-95
ACGACTA398900.07.17377394-95
TGCCGTC100150.07.161113794-95
GACTAGT343950.07.12539694-95
TAGTAAT278800.06.899487594-95
TAATCTC236700.06.892694-95
GCCGTCT88000.06.665594694-95
Produced by FastQC (version 0.11.5)