FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004969801

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004969801
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13534572
Sequences flagged as poor quality0
Sequence length101
%GC51

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTATCA75600.010.61796194-95
CCGTATC89200.010.19718194-95
GCCGTAT97150.010.12054294-95
CGCCGTA108200.09.28451694-95
TCGCCGT129700.08.88071594-95
GTCGCCG150000.08.54965794-95
TGGTCGC176700.08.19859694-95
GTGGTCG202850.07.84415294-95
GGTCGCC168900.07.663250494-95
GTATCAT93800.07.620962694-95
TCGGTGG282250.07.40448694-95
CGGTGGT260100.07.350243694-95
TCTCGGT319150.07.11392494-95
ATCTCGG351800.06.86548694-95
CTCGGTG322500.06.76019494-95
GATCTCG374400.06.723822694-95
TAGATCT438050.06.71728694-95
AGATCTC444750.06.11948594-95
GTAGATC558700.05.89581794-95
GTGTAGA552950.05.87122794-95
Produced by FastQC (version 0.11.5)