FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004969805

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004969805
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13721778
Sequences flagged as poor quality0
Sequence length101
%GC51

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTATCA77400.010.98286194-95
CCGTATC91350.010.05948594-95
GCCGTAT97650.09.67796994-95
CGCCGTA109900.09.528275594-95
TCGCCGT133450.09.12792794-95
GTCGCCG155150.08.61648394-95
GGTCGCC170900.08.16974794-95
TGGTCGC181500.07.954270494-95
GTATCAT94750.07.944259694-95
CGGTGGT264800.07.5413994-95
GTGGTCG209800.07.266125794-95
GATCTCG382100.07.158941394-95
ATCTCGG359300.07.110963394-95
TCGGTGG288550.07.06056794-95
TCTCGGT321750.07.055255494-95
TAGATCT445000.06.47253294-95
CTCGGTG323850.06.408271394-95
AGATCTC456150.06.35075794-95
ATCATTA103200.06.18936394-95
GGTGGTC297550.06.1766794-95
Produced by FastQC (version 0.11.5)