FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004969806

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004969806
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16010372
Sequences flagged as poor quality0
Sequence length101
%GC51

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG67350.09.379209594-95
CGTATGC83050.09.20743194-95
TCGTATG91450.09.19267394-95
CTCGTAT101050.08.95387394-95
TCTCGTA119050.08.1586194-95
ATCTCGT138850.07.91876394-95
GTATGCC102050.07.423349494-95
ATGCCGT82200.06.87586694-95
CATCTCG174100.06.711020594-95
ATTGGCT323150.06.20975994-95
ACATTGG369000.06.02381694-95
CACATTG415000.05.91118494-95
TTGGCTC347600.05.889111594-95
GTCACAT451850.05.80225894-95
CCGTCTT82700.05.771820594-95
GCCGTCT84800.05.76890894-95
TGCCGTC93200.05.75857194-95
CATTGGC362800.05.629199592-93
TCACATT472300.05.39012894-95
AGTCACA519300.05.323005794-95
Produced by FastQC (version 0.11.5)