FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004969807

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004969807
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16010372
Sequences flagged as poor quality0
Sequence length101
%GC51

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCCGTAT76200.09.752995594-95
CGCCGTA85500.09.16424194-95
CGTATCA61900.08.8607494-95
CCGTATC73500.08.78678994-95
TGGTCGC146300.07.968669494-95
TCGCCGT107100.07.936740494-95
TCTCGGT261400.07.20304794-95
GGTCGCC147200.07.19408794-95
GTGGTCG172150.07.130699694-95
GTCGCCG129150.07.041302794-95
ATCTCGG298550.06.76801294-95
GATCTCG314500.06.43231994-95
TCGGTGG237100.06.409194-95
TAGATCT351650.06.28619394-95
GTATCAT87000.06.140615594-95
CTCGGTG279650.06.113167394-95
CGGTGGT226500.06.059102594-95
GTAGATC441950.06.027932694-95
GTGTAGA449500.05.94781394-95
AGTGTAG463000.05.907723494-95
Produced by FastQC (version 0.11.5)