FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004969809

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004969809
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15941355
Sequences flagged as poor quality0
Sequence length101
%GC51

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCCGTAT69650.010.15238494-95
CGTATCA53950.010.02804694-95
CCGTATC67350.09.7944594-95
CGCCGTA76450.09.15624494-95
TCGCCGT98550.07.873430794-95
GTGGTCG156950.07.63489394-95
TGGTCGC132700.07.420788394-95
GTCGCCG119500.07.2476694-95
TCTCGGT244850.07.026042594-95
CGGTGGT210500.06.966413594-95
TCGGTGG227550.06.96582494-95
GGTCGCC134150.06.89837594-95
GATCTCG293800.06.776150794-95
ATCTCGG282300.06.774808494-95
TAGATCT336900.06.296647594-95
GTATCAT77900.06.274839494-95
CTCGGTG262800.06.184976694-95
AGATCTC361350.05.92969894-95
AGTGTAG436750.05.92740794-95
GAGTGTA456800.05.838658394-95
Produced by FastQC (version 0.11.5)