FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004969813

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004969813
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15794666
Sequences flagged as poor quality0
Sequence length101
%GC51

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTATCA53950.09.77124394-95
CGCCGTA74300.09.52392194-95
GCCGTAT66050.08.77213694-95
TCGCCGT93500.08.33010794-95
CCGTATC64250.07.946092694-95
GTCGCCG115700.07.614279794-95
TGGTCGC133400.07.56521894-95
GGTCGCC132850.07.525040694-95
TCTCGGT237200.07.137779794-95
GTGGTCG155000.07.04716594-95
ATCTCGG270900.06.933552394-95
GATCTCG283300.06.873146594-95
CGGTGGT203150.06.77952894-95
TCGGTGG215700.06.704331494-95
GTATCAT78600.06.37453194-95
TAGATCT317100.06.27532394-95
CTCGGTG253800.06.062778594-95
GAGTGTA436750.05.89365594-95
AGTGTAG418550.05.87193694-95
GTAGATC397350.05.86251794-95
Produced by FastQC (version 0.11.5)