FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004969815

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004969815
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15681969
Sequences flagged as poor quality0
Sequence length101
%GC51

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCCGTA76450.09.50567694-95
GCCGTAT67700.09.36616294-95
CGTATCA52550.09.2192794-95
CCGTATC62900.08.683928594-95
TCGCCGT96250.07.994353394-95
TGGTCGC129200.07.24223894-95
GGTCGCC128850.07.05916794-95
GTGGTCG152650.07.00091594-95
TCGGTGG216600.06.995218894-95
TCTCGGT236000.06.993778794-95
CGGTGGT202250.06.89268994-95
GTCGCCG116000.06.87892294-95
CTCGGTG251650.06.5210994-95
GTATCAT79100.06.48509594-95
ATCTCGG271100.06.333559594-95
GATCTCG278850.06.293799494-95
TAGATCT316750.06.253001794-95
GTAGATC396250.05.78358594-95
GAGTGTA433150.05.751435394-95
AGTGTAG413000.05.721528594-95
Produced by FastQC (version 0.11.5)