FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004969824

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004969824
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11829323
Sequences flagged as poor quality0
Sequence length101
%GC51

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG146200.011.56538694-95
CGTATGC186450.010.59713494-95
TCGTATG211050.010.43090294-95
ATGCCGT143600.010.26986394-95
GTATGCC183100.010.10361194-95
CTCGTAT235900.010.04685494-95
GCCGTCT123750.09.44163994-95
TGCCGTC142550.09.32928494-95
TCTCGTA262050.09.3161594-95
CCGTCTT110700.09.16025994-95
ATCTCGT302700.09.05359294-95
AATCTCG322800.08.91654594-95
TTAATCT412200.08.12917694-95
CTTAATC437300.07.96669494-95
TAATCTC387750.07.95581894-95
CGTCTTC122700.07.8385994-95
AACTTAA552900.07.41776894-95
CCGAACT681150.07.304134494-95
CGAACTT626550.07.300087594-95
ACTTAAT484950.07.276949494-95
Produced by FastQC (version 0.11.5)