FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004969825

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004969825
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11829323
Sequences flagged as poor quality0
Sequence length101
%GC51

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTATCA126450.011.5780794-95
CCGTATC148700.011.31371194-95
GCCGTAT166200.010.87912194-95
CGCCGTA187300.010.45167894-95
TCGCCGT219900.010.04602694-95
GTATCAT131050.09.97664294-95
GTCGCCG250900.09.400599594-95
TGGTCGC307850.09.22624294-95
GGTCGCC283500.08.97246194-95
TATCATT137700.08.77109294-95
ATCATTA122700.08.52832794-95
GTGGTCG352900.08.52584694-95
CGGTGGT442500.07.904129594-95
TCATTAA122650.07.75794494-95
TCGGTGG477400.07.59967394-95
TCTCGGT552800.07.35720194-95
CATTAAA120400.07.351097694-95
GGTGGTC455550.07.16203694-95
CTCGGTG534300.07.105663394-95
ATCTCGG608500.07.05420194-95
Produced by FastQC (version 0.11.5)