FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004969826

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004969826
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11622723
Sequences flagged as poor quality0
Sequence length101
%GC51

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCGTATG213300.011.04526394-95
TATGCCG146750.011.03726694-95
CGTATGC187400.010.89893594-95
ATGCCGT143250.010.29561394-95
CTCGTAT237200.010.22271694-95
GTATGCC183300.010.06731894-95
GCCGTCT123700.09.77244794-95
TGCCGTC142100.09.74383194-95
CCGTCTT107200.09.72579294-95
TCTCGTA265550.09.22972294-95
ATCTCGT303000.08.73951894-95
AATCTCG324250.08.43777194-95
TTAATCT414600.07.899328794-95
CTTAATC435550.07.890158794-95
TAATCTC388550.07.67711394-95
CGTCTTC120450.07.61089594-95
ACTTAAT483500.07.417126794-95
GAACTTA596900.07.38070194-95
AACTTAA549100.07.370194-95
CGAACTT623300.07.292896394-95
Produced by FastQC (version 0.11.5)