FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004969828

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004969828
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11615164
Sequences flagged as poor quality0
Sequence length101
%GC51

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG145750.011.50325294-95
CGTATGC183600.010.28297894-95
ATGCCGT140750.010.25840194-95
GTATGCC181850.010.09463694-95
TCGTATG205750.09.97236994-95
CTCGTAT227850.09.81807594-95
CCGTCTT110650.09.70088894-95
GCCGTCT122100.09.43301594-95
TCTCGTA254450.09.12768994-95
TGCCGTC138100.09.02796994-95
AATCTCG316200.08.83973294-95
ATCTCGT290000.08.71300894-95
TAATCTC374950.07.95501194-95
CTTAATC423850.07.872063694-95
TTAATCT403000.07.67238594-95
AACTTAA538400.07.63513194-95
CGTCTTC122900.07.613227494-95
ACTTAAT469050.07.45775494-95
CGAACTT608400.07.35387494-95
GAACTTA579500.07.343600394-95
Produced by FastQC (version 0.11.5)