FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004969831

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004969831
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11651718
Sequences flagged as poor quality0
Sequence length101
%GC51

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCGTATC151750.012.23856294-95
CGTATCA128850.012.16499294-95
GCCGTAT169000.011.39689294-95
CGCCGTA190600.010.77818294-95
GTATCAT130300.09.95177594-95
TCGCCGT223500.09.77603294-95
GTCGCCG258400.09.17255594-95
GGTCGCC290450.09.0925594-95
ATCATTA120600.09.01925294-95
TATCATT133350.08.81585794-95
TGGTCGC309400.08.65846894-95
TCATTAA121450.08.29126394-95
GTGGTCG351250.07.89730394-95
CGGTGGT437100.07.60132394-95
TCGGTGG476200.07.510829494-95
CATTAAA117450.07.501933694-95
ATCTCGG598450.07.115488594-95
TCTCGGT543850.07.10494594-95
GATCTCG644900.07.011757494-95
CTCGGTG525600.06.967569494-95
Produced by FastQC (version 0.11.5)