FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004969834

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004969834
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11728090
Sequences flagged as poor quality0
Sequence length101
%GC51

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG141650.011.43352394-95
CGTATGC183450.011.08072994-95
ATGCCGT139650.010.61099194-95
TCGTATG207500.010.48309894-95
CTCGTAT231150.010.17076494-95
GCCGTCT119900.010.12078194-95
GTATGCC181450.010.01190594-95
TGCCGTC135050.010.00529694-95
TCTCGTA259850.09.65058194-95
CCGTCTT107150.09.10881594-95
ATCTCGT297950.08.934587594-95
AATCTCG318650.08.7715294-95
TAATCTC380750.08.22653994-95
TTAATCT407800.07.972022594-95
CTTAATC428350.07.57847894-95
CGAACTT610550.07.43278894-95
CCGAACT660100.07.184236594-95
CGTCTTC121050.07.160450594-95
GAACTTA580250.07.12927494-95
AACTTAA539400.07.057239594-95
Produced by FastQC (version 0.11.5)