FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004969836

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004969836
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14204875
Sequences flagged as poor quality0
Sequence length101
%GC51

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTATGC72800.010.53634994-95
TCGTATG80900.010.18591494-95
CTCGTAT89800.09.38795794-95
TATGCCG58150.09.14781594-95
TCTCGTA103800.08.55644394-95
ATCTCGT122600.08.3290894-95
GTATGCC87550.07.676254394-95
CATCTCG157050.07.33369594-95
CGATGAA280800.07.19794-95
ATGCCGT71350.06.623297792-93
GCCGTCT73600.06.6144794-95
GAATCAT230800.06.554244594-95
TGAATCA264400.06.53866394-95
ATGAATC264650.06.5145494-95
AATCATC217750.06.43447194-95
TCACGAT339550.06.40635294-95
ACGATGA314500.06.395607594-95
GTCACGA359100.06.34194294-95
AGTCACG391650.06.227179594-95
GATGAAT308800.06.182979694-95
Produced by FastQC (version 0.11.5)