FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004969837

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004969837
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14204875
Sequences flagged as poor quality0
Sequence length101
%GC51

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCCGTA74100.010.12531194-95
GCCGTAT66950.09.6107794-95
CGTATCA51500.09.12845994-95
CCGTATC63250.08.97174494-95
TCGCCGT95300.08.76979194-95
TGGTCGC130300.07.9994494-95
GTGGTCG153500.07.67207494-95
GTCGCCG116750.07.585626694-95
GGTCGCC130550.07.32938794-95
TCTCGGT236750.07.22074594-95
GATCTCG281550.06.611500394-95
TCGGTGG214250.06.560551694-95
ATCTCGG266150.06.46771794-95
CGGTGGT201900.06.45617894-95
CTCGGTG248750.06.328341594-95
TAGATCT320450.06.312752794-95
AGATCTC340350.06.034340494-95
AGTGTAG416250.05.86949394-95
GTAGATC403850.05.867457494-95
GAGTGTA435300.05.71626294-95
Produced by FastQC (version 0.11.5)