FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004969838

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004969838
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11677744
Sequences flagged as poor quality0
Sequence length101
%GC51

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG144700.011.66796894-95
CGTATGC185650.011.00012594-95
TCGTATG208800.010.49700394-95
GTATGCC182450.010.42516194-95
ATGCCGT141450.010.22370994-95
CTCGTAT234550.010.2152794-95
TCTCGTA259500.09.56253594-95
TGCCGTC136250.09.3939194-95
GCCGTCT119150.09.28722694-95
CCGTCTT108550.09.16596894-95
ATCTCGT299350.08.73377894-95
AATCTCG320100.08.53112494-95
TAATCTC382700.07.892648794-95
TTAATCT409200.07.689079894-95
CGTCTTC119300.07.6831894-95
CTTAATC432200.07.6699994-95
ACTTAAT479600.07.44668294-95
AACTTAA547300.07.280490494-95
CGAACTT614950.07.170777394-95
GAACTTA586300.07.148566294-95
Produced by FastQC (version 0.11.5)