FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004969840

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004969840
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14105937
Sequences flagged as poor quality0
Sequence length101
%GC51

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCGTATG77550.09.98315194-95
CGTATGC69750.09.80573594-95
TATGCCG56250.09.49930694-95
CTCGTAT86300.09.24613894-95
TCTCGTA98850.08.36054294-95
ATGCCGT67150.07.95734994-95
ATCTCGT118250.07.65166194-95
CATCTCG149150.07.27653994-95
CGATGAA262450.06.98558394-95
GTATGCC85350.06.87266894-95
TCACGAT314800.06.623563394-95
TGCCGTC79450.06.60587494-95
GTCACGA333550.06.53602494-95
ATGAATC246550.06.405433794-95
ACGATGA292900.06.35665494-95
GCCGTCT69150.06.319133894-95
GATGAAT289650.06.13281794-95
AGTCACG365400.06.083299694-95
CACGATG324950.06.065874694-95
AATCATC210250.06.042959794-95
Produced by FastQC (version 0.11.5)