FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004969844

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004969844
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13954811
Sequences flagged as poor quality0
Sequence length101
%GC51

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCGTATG75500.09.5936294-95
CGTATGC69100.09.24493594-95
CTCGTAT82950.09.13279994-95
TATGCCG56050.08.93997994-95
TCTCGTA99950.08.48232894-95
ATCTCGT117250.08.38527194-95
ATGCCGT67250.07.73359694-95
GTATGCC83300.07.09878494-95
CGATGAA251750.06.791921694-95
ATGAATC238900.06.74968194-95
CATCTCG146650.06.671827394-95
ACGATGA279700.06.41038594-95
TCACGAT301300.06.392215394-95
GTCACGA316750.06.35033294-95
AGTCACG348050.06.16817294-95
TGCCGTC79650.06.02275594-95
GATGAAT277100.05.9991794-95
TGAATCA239950.05.95806794-95
CACGATG314400.05.88416194-95
GAATCAT206500.05.865158694-95
Produced by FastQC (version 0.11.5)