FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004969845

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004969845
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13954811
Sequences flagged as poor quality0
Sequence length101
%GC51

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTATCA48050.010.5264794-95
GCCGTAT62850.09.40785594-95
CGCCGTA69300.09.28608494-95
CCGTATC59850.08.92719394-95
TGGTCGC120100.08.42292994-95
TCGCCGT88850.08.39206494-95
GTCGCCG104850.07.74558594-95
GGTCGCC120350.07.53726694-95
GTGGTCG139700.07.25818594-95
TCTCGGT213150.06.740103794-95
ATCTCGG245300.06.718285694-95
GATCTCG254350.06.59127694-95
GTATCAT74300.06.51985594-95
TAGATCT287100.06.24468294-95
CGGTGGT185800.06.147463394-95
TCGGTGG194900.06.04319294-95
AGTGTAG373850.05.83098494-95
GTAGATC360450.05.73812194-95
GAGTGTA388200.05.701077594-95
GTGTAGA365350.05.7001694-95
Produced by FastQC (version 0.11.5)