FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004969846

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004969846
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13812525
Sequences flagged as poor quality0
Sequence length101
%GC51

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTATGC65500.09.46272294-95
CTCGTAT78650.09.32989294-95
TCGTATG71650.09.31337394-95
TATGCCG52200.09.23511894-95
TCTCGTA92950.08.83982394-95
ATCTCGT110150.08.32184694-95
ATGCCGT64550.07.32105694-95
CATCTCG141150.07.268080794-95
CGATGAA247200.07.185714794-95
GTATGCC79800.07.05281294-95
ATGAATC237650.06.72502894-95
ACGATGA280000.06.462697594-95
TCACGAT300850.06.38580194-95
TGAATCA238550.06.34127994-95
TGCCGTC74600.06.271107794-95
AGTCACG350900.06.246477694-95
GTCACGA319400.06.21567494-95
GATGAAT279100.06.15170394-95
GAATCAT209050.06.06607794-95
CACGATG313000.05.993764494-95
Produced by FastQC (version 0.11.5)