FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004969848

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004969848
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13581790
Sequences flagged as poor quality0
Sequence length101
%GC51

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCGTAT81200.09.70991894-95
TCGTATG70700.09.30451894-95
CGTATGC65500.09.28179994-95
TATGCCG53200.09.15115294-95
TCTCGTA94050.08.40850894-95
ATCTCGT108550.07.504085594-95
GTATGCC78850.07.19829694-95
CGATGAA237200.07.088462494-95
TCACGAT290950.07.019619594-95
ATGAATC231550.06.7588794-95
CATCTCG138450.06.586758694-95
ATGCCGT65000.06.53993194-95
GTCACGA307600.06.477524894-95
ACGATGA271250.06.47005894-95
CACGATG302200.06.412526694-95
GATGAAT269850.06.18680594-95
AGTCACG340600.06.08699794-95
TGAATCA234850.05.996496794-95
AATCATC191650.05.97271494-95
TGCCGTC71550.05.90804694-95
Produced by FastQC (version 0.11.5)