FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004969853

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004969853
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13790095
Sequences flagged as poor quality0
Sequence length101
%GC51

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTATCA48450.010.09587694-95
CGCCGTA69500.09.70295894-95
GCCGTAT61600.09.55964194-95
CCGTATC59700.09.38659994-95
TCGCCGT88550.08.74177594-95
GTCGCCG107600.07.789920394-95
TGGTCGC121700.07.433699694-95
GGTCGCC120200.07.427693494-95
GTGGTCG141900.07.178694794-95
TCTCGGT213150.06.70628194-95
ATCTCGG244200.06.670356894-95
GATCTCG254050.06.551932394-95
TCGGTGG196750.06.22738294-95
CGGTGGT185650.06.16485294-95
GTATCAT71600.06.10204594-95
TAGATCT287650.06.050763694-95
AGTGTAG375950.05.9812394-95
GTGTAGA365850.05.78289494-95
CTCGGTG229850.05.77481294-95
GAGTGTA393050.05.769340594-95
Produced by FastQC (version 0.11.5)