FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004969855

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004969855
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11443859
Sequences flagged as poor quality0
Sequence length101
%GC51

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTATCA77000.010.57648194-95
CGCCGTA109750.010.31933494-95
GCCGTAT98250.010.22222994-95
CCGTATC90550.09.859097594-95
TCGCCGT131700.09.4467794-95
GTCGCCG154450.08.77780694-95
GTGGTCG208650.08.1931794-95
TGGTCGC183450.08.19263894-95
GTATCAT90600.08.07161294-95
GGTCGCC173950.08.06679294-95
CGGTGGT266850.07.34937994-95
TCGGTGG288650.07.180926394-95
ATCATTA92750.06.911743694-95
GGTGGTC288450.06.757879394-95
CTCGGTG325600.06.737912794-95
TCTCGGT323550.06.67786794-95
TATCATT104400.06.59531194-95
ATCTCGG358250.06.33591794-95
GATCTCG381550.06.30992694-95
TAGATCT431750.06.02170694-95
Produced by FastQC (version 0.11.5)