FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004969856

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004969856
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11283273
Sequences flagged as poor quality0
Sequence length101
%GC51

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG88400.010.07402294-95
ATGCCGT89600.09.9921194-95
TCGTATG116650.09.52763394-95
CGTATGC108150.09.06874994-95
CTCGTAT129350.08.94100794-95
TCTCGTA145100.08.34692794-95
TGCCGTC96000.08.26226594-95
ATCTCGT167400.08.15710994-95
AATCTCG176650.07.958513794-95
GTATGCC114900.07.957437592-93
CCGTCTT79600.07.72699594-95
GCCGTCT87350.07.44923394-95
TGAATCT256550.07.081305594-95
CTGAATC280000.06.802056394-95
CGTCTTC90700.06.781353594-95
CGAATCT360050.06.77378794-95
GAATCTC230350.06.711454494-95
ACGAATC382550.06.698184594-95
CACGAAT411650.06.32852394-95
AATCTGA359250.06.167494394-95
Produced by FastQC (version 0.11.5)